Annotation of co-expression genes

PH01002610G0060's details annotation

1.Annotation

ICBR annotation: ubiquitin carboxyl-terminal hydrolase 5, putative, expressed

Blast result AT4G10590 : 0.00E+00
Blast annotation: ubiquitin-specific protease 10

2.Location

Scaffold: PH01002610
Strand: +

RegionStartEnd
gene3864650536
mRNA3864650536
exon3864638926
exon4040640630
exon4210342367
exon4378243841
exon4396044055
exon4460245000
exon4508945229
exon4615246322
exon4725647513
exon4760147741
exon4803148212
exon4847149028
exon4915049426
exon4954850536
CDS3877838926
CDS4040640630
CDS4210342367
CDS4378243841
CDS4396044055
CDS4460245000
CDS4508945229
CDS4615246322
CDS4725647513
CDS4760147741
CDS4803148212
CDS4847149028
CDS4915049426
CDS4954849727

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000393protein_prenylation
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
protein prenyltransferase activity,
RNA_degradation
ubiquitin-dependent protein catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06337.11DUSP41124
PF00443.28UCH3541007

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004221ubiquitin thiolesterase activity
GO:0006511ubiquitin-dependent protein catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.