Annotation of co-expression genes

PH01002623G0190's details annotation

1.Annotation

ICBR annotation: Rer1 protein, putative, expressed

Blast result AT4G39220 : 9.80E-61
Blast annotation: Rer1 family protein

2.Location

Scaffold: PH01002623
Strand: -

RegionStartEnd
gene133187139276
mRNA133187139276
exon133187135127
exon135465135645
exon136174136221
exon137844139276
CDS135077135127
CDS135465135645
CDS136174136221
CDS137844138160

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000856SNARE_interactions_in_vesicular_transport
chitinase activity,
cell wall macromolecule catabolic process,
chitin catabolic process,
vesicle-mediated transport,
coexpression networkCFinderM001339chitin catabolic process,
chitinase activity,
cell wall macromolecule catabolic process,
GH19 Glycoside_Hydrolases
coexpression networkCFinderM001700leucine biosynthetic process,
tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
2-isopropylmalate synthase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03248.12Rer18169

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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