PH01002626G0200's details annotation
1.Annotation
ICBR annotation: Os6bglu25 - beta-glucosidase homologue, similar to Os3bglu6, expressed
Blast result AT5G54570 : 0.00E+00
Blast annotation: beta glucosidase 41
2.Location
Scaffold: PH01002626
Strand: -
| Region | Start | End |
| gene | 108003 | 112834 |
| mRNA | 108003 | 112834 |
| exon | 108003 | 108851 |
| exon | 108977 | 109085 |
| exon | 109183 | 109285 |
| exon | 109397 | 109428 |
| exon | 109513 | 109760 |
| exon | 109850 | 109965 |
| exon | 110066 | 110321 |
| exon | 110613 | 110706 |
| exon | 110789 | 110921 |
| exon | 111976 | 112034 |
| exon | 112125 | 112191 |
| exon | 112305 | 112834 |
| CDS | 108665 | 108851 |
| CDS | 108977 | 109085 |
| CDS | 109183 | 109285 |
| CDS | 109397 | 109428 |
| CDS | 109513 | 109760 |
| CDS | 109850 | 109965 |
| CDS | 110066 | 110321 |
| CDS | 110613 | 110706 |
| CDS | 110789 | 110921 |
| CDS | 111976 | 112034 |
| CDS | 112125 | 112191 |
| CDS | 112305 | 112421 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000477 | Valine,_leucine_and_isoleucine_degradation ZF-HD Transcription_Regulator(from PlantTFDB) Cyanoamino_acid_metabolism oxidoreductase activity, acting on the CH-CH group of donors, acyl-CoA dehydrogenase activity, Rab GTPase activator activity, Phenylpropanoid_biosynthesis regulation of Rab GTPase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00232.17 | Glyco_hydro_1 | 23 | 82 |
| PF00232.17 | Glyco_hydro_1 | 99 | 151 |
| PF00232.17 | Glyco_hydro_1 | 158 | 502 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cyanoamino acid metabolism | beta-glucosidase [EC:3.2.1.21] | ko00460 | K01188 |
| Phenylpropanoid biosynthesis | beta-glucosidase [EC:3.2.1.21] | ko00940 | K01188 |
| Starch and sucrose metabolism | beta-glucosidase [EC:3.2.1.21] | ko00500 | K01188 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.