PH01002631G0110's details annotation
1.Annotation
ICBR annotation: gibberellin 20 oxidase 2, putative, expressed
Blast result AT4G25420 : 7.00E-38
Blast annotation: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
2.Location
Scaffold: PH01002631
Strand: +
| Region | Start | End |
| gene | 46360 | 50399 |
| mRNA | 46360 | 50399 |
| exon | 46360 | 46833 |
| exon | 47232 | 47556 |
| exon | 48708 | 48883 |
| exon | 49537 | 50399 |
| CDS | 46532 | 46833 |
| CDS | 47232 | 47556 |
| CDS | 48708 | 48883 |
| CDS | 49537 | 49825 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03171.19 | 2OG-FeII_Oxy | 142 | 210 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.