PH01002634G0180's details annotation
1.Annotation
ICBR annotation: chaperone protein dnaJ, putative, expressed
Blast result AT3G44110 : 0.00E+00
Blast annotation: DNAJ homologue 3
2.Location
Scaffold: PH01002634
Strand: +
| Region | Start | End |
| gene | 107404 | 113354 |
| mRNA | 107404 | 113354 |
| exon | 107404 | 108060 |
| exon | 110699 | 110861 |
| exon | 110963 | 111107 |
| exon | 111196 | 111472 |
| exon | 111560 | 111758 |
| exon | 111842 | 113354 |
| CDS | 107911 | 108060 |
| CDS | 110699 | 110861 |
| CDS | 110963 | 111107 |
| CDS | 111196 | 111472 |
| CDS | 111560 | 111758 |
| CDS | 111842 | 112167 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000101 | RLK-Pelle_RLCK-VIIa-2 (from iTAK) response to heat, |
| coexpression network | CFinderM000933 | TKL-Pl-4 (from iTAK) Others Transcription_Regulator(from iTAK) response to heat, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001290 | Protein_processing_in_endoplasmic_reticulum AGC_NDR (from iTAK) |
| coexpression network | CFinderM001420 | heat shock protein binding, Protein_processing_in_endoplasmic_reticulum unfolded protein binding, CAMK_CDPK (from iTAK) response to heat, protein folding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00226.30 | DnaJ | 13 | 71 |
| PF01556.17 | DnaJ_C | 122 | 343 |
| PF00684.18 | DnaJ_CXXCXGXG | 148 | 214 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | DnaJ homolog subfamily A member 2 | ko04141 | K09503 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006457 | protein folding |
| GO:0009408 | response to heat |
| GO:0031072 | heat shock protein binding |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.