PH01002667G0050's details annotation
1.Annotation
ICBR annotation: proteasome subunit, putative, expressed
Blast result AT1G32080 : 2.00E-173
Blast annotation: membrane protein, putative
2.Location
Scaffold: PH01002667
Strand: -
| Region | Start | End |
| gene | 47331 | 60609 |
| mRNA | 47331 | 60609 |
| exon | 47331 | 47766 |
| exon | 48485 | 48584 |
| exon | 48679 | 48875 |
| exon | 49667 | 49747 |
| exon | 49881 | 50327 |
| exon | 51255 | 51442 |
| exon | 52845 | 52936 |
| exon | 53049 | 53178 |
| exon | 53326 | 53503 |
| exon | 53600 | 53709 |
| exon | 53843 | 53958 |
| exon | 54057 | 54318 |
| exon | 54709 | 55024 |
| exon | 55795 | 55908 |
| exon | 56196 | 56288 |
| exon | 57266 | 57375 |
| exon | 57547 | 57646 |
| exon | 57779 | 57934 |
| exon | 58314 | 58356 |
| exon | 58449 | 58544 |
| exon | 59154 | 59321 |
| exon | 59384 | 59551 |
| exon | 59666 | 60609 |
| CDS | 47581 | 47766 |
| CDS | 48485 | 48584 |
| CDS | 48679 | 48875 |
| CDS | 49667 | 49747 |
| CDS | 49881 | 50327 |
| CDS | 51255 | 51442 |
| CDS | 52845 | 52936 |
| CDS | 53049 | 53178 |
| CDS | 53326 | 53503 |
| CDS | 53600 | 53709 |
| CDS | 53843 | 53958 |
| CDS | 54057 | 54318 |
| CDS | 54709 | 55024 |
| CDS | 55795 | 55908 |
| CDS | 56196 | 56288 |
| CDS | 57266 | 57375 |
| CDS | 57547 | 57646 |
| CDS | 57779 | 57934 |
| CDS | 58314 | 58356 |
| CDS | 58449 | 58544 |
| CDS | 59154 | 59321 |
| CDS | 59384 | 59551 |
| CDS | 59666 | 59889 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01467.25 | CTP_transf_like | 187 | 256 |
| PF04172.15 | LrgB | 608 | 828 |
| PF01399.26 | PCI | 1075 | 1181 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Proteasome | 26S proteasome regulatory subunit N9 | ko03051 | K03039 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005515 | protein binding |
| GO:0009058 | biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.