Annotation of co-expression genes

PH01002673G0070's details annotation

1.Annotation

ICBR annotation: OsSPL16 - SBP-box gene family member, expressed

Blast result AT5G50570 : 2.90E-40
Blast annotation: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

2.Location

Scaffold: PH01002673
Strand: +

RegionStartEnd
gene4682554340
mRNA4682554340
exon4682548113
exon5149551625
exon5284054340
CDS4770448113
CDS5149551625
CDS5284053483

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipphe-miR156b  
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000999exocytosis,
SBP Transcription_Regulator(from PlantTFDB)
exocyst,
Protein_processing_in_endoplasmic_reticulum

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SBP
Transcription_Regulator(from PlantTFDB)SBP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03110.13SBP97170

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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