Annotation of co-expression genes

PH01002699G0080's details annotation

1.Annotation

ICBR annotation: cytidylyltransferase domain containing protein, expressed

Blast result AT4G15130 : 1.00E-108
Blast annotation: phosphorylcholine cytidylyltransferase2

2.Location

Scaffold: PH01002699
Strand: +

RegionStartEnd
gene5936762666
mRNA5936762666
exon5936760338
exon6070960918
exon6140961504
exon6159861640
exon6172961884
exon6202462125
exon6226862378
exon6254062666
CDS6016360338
CDS6070960918
CDS6140961504
CDS6159861640
CDS6172961884
CDS6202462125
CDS6226862378
CDS6254062644

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01467.25CTP_transf_like3799
PF01467.25CTP_transf_like128198

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycerophospholipid metabolismcholine-phosphate cytidylyltransferase [EC:2.7.7.15]ko00564K00968
Phosphonate and phosphinate metabolismcholine-phosphate cytidylyltransferase [EC:2.7.7.15]ko00440K00968

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0009058biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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