PH01002699G0200's details annotation
1.Annotation
ICBR annotation: CS domain containing protein, putative, expressed
Blast result AT2G35500 : 2.00E-109
Blast annotation: shikimate kinase like 2
2.Location
Scaffold: PH01002699
Strand: -
| Region | Start | End |
| gene | 138171 | 143036 |
| mRNA | 138171 | 143036 |
| exon | 138171 | 139344 |
| exon | 139695 | 139871 |
| exon | 139963 | 140081 |
| exon | 140701 | 140895 |
| exon | 140968 | 141158 |
| exon | 142145 | 143036 |
| CDS | 139220 | 139344 |
| CDS | 139695 | 139871 |
| CDS | 139963 | 140081 |
| CDS | 140701 | 140895 |
| CDS | 140968 | 141158 |
| CDS | 142145 | 142147 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01202.21 | SKI | 189 | 280 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.