PH01002706G0160's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase 6, putative, expressed
Blast result AT1G51710 : 1.00E-142
Blast annotation: ubiquitin-specific protease 6
2.Location
Scaffold: PH01002706
Strand: +
| Region | Start | End |
| gene | 108697 | 118089 |
| mRNA | 108697 | 118089 |
| exon | 108697 | 109486 |
| exon | 109616 | 109761 |
| exon | 110036 | 110143 |
| exon | 110504 | 110604 |
| exon | 110688 | 110814 |
| exon | 113596 | 113655 |
| exon | 113748 | 113812 |
| exon | 115202 | 115310 |
| exon | 116010 | 116033 |
| exon | 116325 | 116405 |
| exon | 116491 | 116565 |
| exon | 116725 | 116773 |
| exon | 117007 | 117126 |
| exon | 117217 | 117291 |
| exon | 117370 | 118089 |
| CDS | 109426 | 109486 |
| CDS | 109616 | 109761 |
| CDS | 110036 | 110143 |
| CDS | 110504 | 110604 |
| CDS | 110688 | 110814 |
| CDS | 113596 | 113655 |
| CDS | 113748 | 113812 |
| CDS | 115202 | 115310 |
| CDS | 116010 | 116033 |
| CDS | 116325 | 116405 |
| CDS | 116491 | 116565 |
| CDS | 116725 | 116773 |
| CDS | 117007 | 117126 |
| CDS | 117217 | 117291 |
| CDS | 117370 | 117419 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 110 | 411 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.