PH01002747G0210's details annotation
1.Annotation
ICBR annotation: flap endonuclease, putative, expressed
Blast result AT3G48900 : 2.00E-100
Blast annotation: single-stranded DNA endonuclease family protein
2.Location
Scaffold: PH01002747
Strand: +
| Region | Start | End |
| gene | 154712 | 163733 |
| mRNA | 154712 | 163733 |
| exon | 154712 | 157040 |
| exon | 157129 | 157177 |
| exon | 157263 | 157746 |
| exon | 158486 | 158522 |
| exon | 158904 | 159327 |
| exon | 159492 | 159553 |
| exon | 160105 | 160177 |
| exon | 160336 | 160409 |
| exon | 161074 | 161133 |
| exon | 161337 | 161493 |
| exon | 161611 | 161710 |
| exon | 161932 | 162014 |
| exon | 162110 | 162210 |
| exon | 162291 | 162421 |
| exon | 162851 | 163733 |
| CDS | 156864 | 157040 |
| CDS | 157129 | 157177 |
| CDS | 157263 | 157746 |
| CDS | 158486 | 158522 |
| CDS | 158904 | 159327 |
| CDS | 159492 | 159553 |
| CDS | 160105 | 160177 |
| CDS | 160336 | 160409 |
| CDS | 161074 | 161133 |
| CDS | 161337 | 161493 |
| CDS | 161611 | 161710 |
| CDS | 161932 | 162014 |
| CDS | 162110 | 162210 |
| CDS | 162291 | 162421 |
| CDS | 162851 | 163700 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03188.15 | Cytochrom_B561 | 61 | 194 |
| PF00752.16 | XPG_N | 336 | 406 |
| PF00867.17 | XPG_I | 411 | 470 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003824 | catalytic activity |
| GO:0004518 | nuclease activity |
| GO:0006281 | DNA repair |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.