PH01002763G0120's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, expressed
Blast result AT3G48250 : 1.00E-134
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01002763
Strand: +
| Region | Start | End |
| gene | 63054 | 65179 |
| mRNA | 63054 | 65179 |
| exon | 63054 | 65179 |
| CDS | 63164 | 64876 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000458 | mTERF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 208 | 237 |
| PF12854.6 | PPR_1 | 344 | 376 |
| PF13041.5 | PPR_2 | 382 | 431 |
| PF01535.19 | PPR | 457 | 485 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.