PH01002789G0040's details annotation
1.Annotation
ICBR annotation: stripe rust resistance protein Yr10, putative, expressed
Blast result AT3G07040 : 2.70E-55
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01002789
Strand: +
| Region | Start | End |
| gene | 17975 | 26013 |
| mRNA | 17975 | 26013 |
| exon | 17975 | 19499 |
| exon | 20088 | 21077 |
| exon | 22114 | 22123 |
| exon | 23430 | 24374 |
| exon | 25293 | 25493 |
| exon | 25691 | 26013 |
| CDS | 18688 | 19499 |
| CDS | 20088 | 21077 |
| CDS | 22114 | 22123 |
| CDS | 23430 | 24374 |
| CDS | 25293 | 25493 |
| CDS | 25691 | 25987 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 187 | 454 |
| PF01419.16 | Jacalin | 941 | 1065 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.