Annotation of co-expression genes

PH01002804G0240's details annotation

1.Annotation

ICBR annotation: vacuolar ATP synthase subunit H, putative, expressed

Blast result AT3G42050 : 4.00E-152
Blast annotation: vacuolar ATP synthase subunit H family protein

2.Location

Scaffold: PH01002804
Strand: +

RegionStartEnd
gene181220189892
mRNA181220189892
exon181220182655
exon183731183856
exon184255184357
exon185290185402
exon185715185876
exon186193186318
exon186423186548
exon188842189021
exon189503189892
CDS182626182655
CDS183731183856
CDS184255184357
CDS185290185402
CDS185715185876
CDS186193186318
CDS186423186548
CDS188842189021
CDS189503189751

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03224.13V-ATPase_H_N687
PF03224.13V-ATPase_H_N128275
PF11698.7V-ATPase_H_C281393

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Oxidative phosphorylationV-type H+-transporting ATPase 54 kD subunit [EC:3.6.3.14]ko00190K02144
PhagosomeV-type H+-transporting ATPase 54 kD subunit [EC:3.6.3.14]ko04145K02144

10.Gene Ontology

GO AccessionGO Annotation
GO:0000221vacuolar proton-transporting V-type ATPase, V1 domain
GO:0005488binding
GO:0005515protein binding
GO:0015991ATP hydrolysis coupled proton transport
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0046961proton-transporting ATPase activity, rotational mechanism

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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