PH01002824G0050's details annotation
1.Annotation
ICBR annotation: methyl-CpG binding domain containing protein, putative, expressed
Blast result AT3G15790 : 1.80E-27
Blast annotation: methyl-CPG-binding domain 11
2.Location
Scaffold: PH01002824
Strand: +
| Region | Start | End |
| gene | 19344 | 25636 |
| mRNA | 19344 | 25636 |
| exon | 19344 | 19542 |
| exon | 23639 | 23777 |
| exon | 23894 | 25636 |
| CDS | 19462 | 19542 |
| CDS | 23639 | 23777 |
| CDS | 23894 | 24654 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000292 | Basal_transcription_factors nucleus, HSF Transcription_Regulator(from PlantTFDB) vesicle docking involved in exocytosis, Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01429.18 | MBD | 18 | 73 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.