PH01002853G0100's details annotation
1.Annotation
ICBR annotation: OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed
Blast result AT1G10520 : 8.00E-179
Blast annotation: DNA polymerase lambda (POLL)
2.Location
Scaffold: PH01002853
Strand: +
| Region | Start | End |
| gene | 78024 | 90348 |
| mRNA | 78024 | 90348 |
| exon | 78024 | 78579 |
| exon | 81009 | 81105 |
| exon | 81209 | 81252 |
| exon | 81385 | 81474 |
| exon | 82065 | 82332 |
| exon | 82375 | 84340 |
| exon | 84531 | 84609 |
| exon | 84996 | 85268 |
| exon | 85335 | 85478 |
| exon | 85691 | 86053 |
| exon | 86526 | 86619 |
| exon | 86696 | 86826 |
| exon | 87646 | 87708 |
| exon | 87788 | 87967 |
| exon | 88066 | 88119 |
| exon | 88357 | 88445 |
| exon | 88813 | 88903 |
| exon | 89227 | 89307 |
| exon | 89699 | 89766 |
| exon | 89838 | 89922 |
| exon | 90002 | 90348 |
| CDS | 78427 | 78579 |
| CDS | 81009 | 81105 |
| CDS | 81209 | 81252 |
| CDS | 81385 | 81474 |
| CDS | 82065 | 82332 |
| CDS | 82375 | 84340 |
| CDS | 84531 | 84609 |
| CDS | 84996 | 85268 |
| CDS | 85335 | 85478 |
| CDS | 85691 | 86053 |
| CDS | 86526 | 86619 |
| CDS | 86696 | 86826 |
| CDS | 87646 | 87708 |
| CDS | 87788 | 87967 |
| CDS | 88066 | 88119 |
| CDS | 88357 | 88445 |
| CDS | 88813 | 88903 |
| CDS | 89227 | 89307 |
| CDS | 89699 | 89766 |
| CDS | 89838 | 89922 |
| CDS | 90002 | 90100 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | LIM |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00412.21 | LIM | 16 | 68 |
| PF00412.21 | LIM | 116 | 171 |
| PF14716.5 | HHH_8 | 1175 | 1240 |
| PF10391.8 | DNA_pol_lambd_f | 1261 | 1307 |
| PF14792.5 | DNA_pol_B_palm | 1310 | 1423 |
| PF14791.5 | DNA_pol_B_thumb | 1431 | 1502 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Base excision repair | DNA polymerase lambda [EC:2.7.7.7;EC:4.2.99.-] | ko03410 | K03512 |
| Non-homologous end-joining | DNA polymerase lambda [EC:2.7.7.7;EC:4.2.99.-] | ko03450 | K03512 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003824 | catalytic activity |
| GO:0003887 | DNA-directed DNA polymerase activity |
| GO:0006281 | DNA repair |
| GO:0008270 | zinc ion binding |
| GO:0016779 | nucleotidyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.