PH01002860G0150's details annotation
1.Annotation
ICBR annotation: PHD-finger domain containing protein, expressed
Blast result AT1G05380 : 1.00E-111
Blast annotation: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
2.Location
Scaffold: PH01002860
Strand: +
| Region | Start | End |
| gene | 88444 | 100149 |
| mRNA | 88444 | 100149 |
| exon | 88444 | 91224 |
| exon | 91985 | 92049 |
| exon | 92107 | 92226 |
| exon | 94122 | 94360 |
| exon | 94670 | 94756 |
| exon | 95176 | 95275 |
| exon | 95668 | 95724 |
| exon | 98177 | 98390 |
| exon | 98496 | 100149 |
| CDS | 88878 | 91224 |
| CDS | 91985 | 92049 |
| CDS | 92107 | 92226 |
| CDS | 94122 | 94360 |
| CDS | 94670 | 94756 |
| CDS | 95176 | 95275 |
| CDS | 95668 | 95724 |
| CDS | 98177 | 98390 |
| CDS | 98496 | 99658 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000931 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis signal recognition particle, ubiquitin thiolesterase activity, ubiquitin-dependent protein catabolic process, chorismate metabolic process, aromatic amino acid family biosynthetic process, SRP-dependent cotranslational protein targeting to membrane, chorismate mutase activity, 7S RNA binding, Protein_export |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16135.4 | Jas | 662 | 735 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008080 | N-acetyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.