PH01002864G0040's details annotation
1.Annotation
ICBR annotation: OsSigP5 - Putative Type I Signal Peptidase homologue
Blast result AT1G52600 : 1.20E-78
Blast annotation: Peptidase S24/S26A/S26B/S26C family protein
2.Location
Scaffold: PH01002864
Strand: -
| Region | Start | End |
| gene | 24105 | 27261 |
| mRNA | 24105 | 27261 |
| exon | 24105 | 24255 |
| exon | 24384 | 24387 |
| exon | 24518 | 24575 |
| exon | 24665 | 24752 |
| exon | 24955 | 25000 |
| exon | 25106 | 25141 |
| exon | 25294 | 25365 |
| exon | 25801 | 26073 |
| exon | 26405 | 27261 |
| CDS | 24158 | 24255 |
| CDS | 24384 | 24387 |
| CDS | 24518 | 24575 |
| CDS | 24665 | 24752 |
| CDS | 24955 | 25000 |
| CDS | 25106 | 25141 |
| CDS | 25294 | 25365 |
| CDS | 25801 | 26073 |
| CDS | 26405 | 26575 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00717.22 | Peptidase_S24 | 53 | 105 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein export | signal peptidase, endoplasmic reticulum-type [EC:3.4.-.-] | ko03060 | K13280 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006465 | signal peptide processing |
| GO:0008233 | peptidase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.