Annotation of co-expression genes

PH01002911G0090's details annotation

1.Annotation

ICBR annotation: splicing factor 3 subunit 1, putative, expressed

Blast result AT1G14650 : 0.00E+00
Blast annotation: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein

2.Location

Scaffold: PH01002911
Strand: -

RegionStartEnd
gene7346976763
mRNA7346976763
exon7346974134
exon7425276763
CDS7386574134
CDS7425276375

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01805.19Surp62110
PF01805.19Surp185235
PF12230.7PRP21_like_P257473
PF00240.22ubiquitin736792

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomesplicing factor 3A subunit 1ko03041K12825

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0005515protein binding
GO:0006396RNA processing

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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