PH01002921G0160's details annotation
1.Annotation
ICBR annotation: DUF292 domain containing protein, expressed
Blast result AT4G35730 : 4.30E-82
Blast annotation: Regulator of Vps4 activity in the MVB pathway protein
2.Location
Scaffold: PH01002921
Strand: +
| Region | Start | End |
| gene | 108296 | 112244 |
| mRNA | 108296 | 112244 |
| exon | 108296 | 109050 |
| exon | 109842 | 109945 |
| exon | 110041 | 110212 |
| exon | 110304 | 110444 |
| exon | 110531 | 110622 |
| exon | 110715 | 112244 |
| CDS | 108931 | 109050 |
| CDS | 109842 | 109945 |
| CDS | 110041 | 110212 |
| CDS | 110304 | 110444 |
| CDS | 110531 | 110622 |
| CDS | 110715 | 111378 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03398.13 | Ist1 | 1 | 161 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.