Annotation of co-expression genes

PH01002924G0170's details annotation

1.Annotation

ICBR annotation: nitrate reductase, putative, expressed

Blast result AT1G77760 : 0.00E+00
Blast annotation: nitrate reductase 1

2.Location

Scaffold: PH01002924
Strand: -

RegionStartEnd
gene148539154283
mRNA148539154283
exon148539149059
exon149121150263
exon150379150611
exon152890153030
exon153167153488
exon153687154283
CDS148865149059
CDS149121150263
CDS150379150611
CDS152890153030
CDS153167153488
CDS153687154220

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00174.18Oxidored_molyb181265
PF03404.15Mo-co_dimer293424
PF00173.27Cyt-b5484554
PF00970.23FAD_binding_6600706
PF00175.20NAD_binding_1726836

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016491oxidoreductase activity
GO:0020037heme binding
GO:0030151molybdenum ion binding
GO:0042128nitrate assimilation
GO:0046857oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor
GO:0046872metal ion binding
GO:0050660flavin adenine dinucleotide binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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