Annotation of co-expression genes

PH01002925G0170's details annotation

1.Annotation

ICBR annotation: multidrug resistance protein, putative, expressed

Blast result AT3G28860 : 0
Blast annotation: ATP binding cassette subfamily B19

2.Location

Scaffold: PH01002925
Strand: +

RegionStartEnd
gene154775160951
mRNA154775160951
exon154775156072
exon156188156504
exon156726156799
exon157450157522
exon157838158047
exon158597158896
exon158983159224
exon159463160951
CDS155921156072
CDS156188156504
CDS156726156799
CDS157450157522
CDS157838158047
CDS158597158896
CDS158983159224
CDS159463160671

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00005.26ABC_tran119261
PF00664.22ABC_membrane304564
PF00005.26ABC_tran635783

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0006810transport
GO:0016021integral to membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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