PH01002935G0170's details annotation
1.Annotation
ICBR annotation: aldehyde oxidase, putative, expressed
Blast result AT4G34890 : 0.00E+00
Blast annotation: xanthine dehydrogenase 1
2.Location
Scaffold: PH01002935
Strand: -
| Region | Start | End |
| gene | 147956 | 165600 |
| mRNA | 147956 | 165600 |
| exon | 147956 | 148334 |
| exon | 149217 | 149390 |
| exon | 149758 | 149931 |
| exon | 150061 | 150297 |
| exon | 151869 | 152003 |
| exon | 152144 | 152305 |
| exon | 152981 | 153157 |
| exon | 153278 | 153562 |
| exon | 153897 | 154136 |
| exon | 154542 | 154886 |
| exon | 160885 | 161199 |
| exon | 161301 | 161543 |
| exon | 161940 | 161990 |
| exon | 162057 | 163559 |
| exon | 164319 | 165600 |
| CDS | 148092 | 148334 |
| CDS | 149217 | 149390 |
| CDS | 149758 | 149931 |
| CDS | 150061 | 150297 |
| CDS | 151869 | 152003 |
| CDS | 152144 | 152305 |
| CDS | 152981 | 153157 |
| CDS | 153278 | 153562 |
| CDS | 153897 | 154136 |
| CDS | 154542 | 154886 |
| CDS | 160885 | 161199 |
| CDS | 161301 | 161543 |
| CDS | 161940 | 161990 |
| CDS | 162057 | 163559 |
| CDS | 164319 | 164321 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01799.19 | Fer2_2 | 4 | 60 |
| PF00941.20 | FAD_binding_5 | 154 | 331 |
| PF03450.16 | CO_deh_flav_C | 340 | 445 |
| PF01315.21 | Ald_Xan_dh_C | 521 | 628 |
| PF02738.17 | Ald_Xan_dh_C2 | 650 | 716 |
| PF02738.17 | Ald_Xan_dh_C2 | 815 | 1281 |
| PF02738.17 | Ald_Xan_dh_C2 | 1285 | 1339 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Purine metabolism | xanthine dehydrogenase/oxidase [EC:1.17.1.4;EC:1.17.3.2] | ko00230 | K00106 |
| Caffeine metabolism | xanthine dehydrogenase/oxidase [EC:1.17.1.4;EC:1.17.3.2] | ko00232 | K00106 |
| Drug metabolism - other enzymes | xanthine dehydrogenase/oxidase [EC:1.17.1.4;EC:1.17.3.2] | ko00983 | K00106 |
| Peroxisome | xanthine dehydrogenase/oxidase [EC:1.17.1.4;EC:1.17.3.2] | ko04146 | K00106 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005506 | iron ion binding |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0046872 | metal ion binding |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.