PH01002944G0020's details annotation
1.Annotation
ICBR annotation: calmodulin-binding transcription activator 5, putative, expressed
Blast result AT4G16150 : 2.00E-117
Blast annotation: calmodulin binding;transcription regulators
2.Location
Scaffold: PH01002944
Strand: +
| Region | Start | End |
| gene | 4508 | 8483 |
| mRNA | 4508 | 8483 |
| exon | 4508 | 4653 |
| exon | 5524 | 5957 |
| exon | 6379 | 6934 |
| exon | 7181 | 7492 |
| exon | 7797 | 8483 |
| CDS | 4600 | 4653 |
| CDS | 5524 | 5957 |
| CDS | 6379 | 6934 |
| CDS | 7181 | 7492 |
| CDS | 7797 | 7841 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12796.6 | Ank_2 | 123 | 213 |
| PF00612.26 | IQ | 319 | 337 |
| PF00612.26 | IQ | 342 | 360 |
| PF00612.26 | IQ | 423 | 442 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.