PH01003023G0310's details annotation
1.Annotation
ICBR annotation: blue-light photoreceptor PHR2, putative, expressed
Blast result AT2G47590 : 3.40E-38
Blast annotation: photolyase/blue-light receptor 2
2.Location
Scaffold: PH01003023
Strand: -
| Region | Start | End |
| gene | 161956 | 166530 |
| mRNA | 161956 | 166530 |
| exon | 161956 | 162135 |
| exon | 162442 | 162540 |
| exon | 162650 | 162879 |
| exon | 163583 | 163603 |
| exon | 163880 | 166530 |
| CDS | 162066 | 162135 |
| CDS | 162442 | 162540 |
| CDS | 162650 | 162879 |
| CDS | 163583 | 163603 |
| CDS | 163880 | 163957 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003913 | DNA photolyase activity |
| GO:0006281 | DNA repair |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.