Annotation of co-expression genes

PH01003026G0060's details annotation

1.Annotation

ICBR annotation: 3-hydroxyacyl-CoA dehydrogenase, putative, expressed

Blast result AT3G06860 : 2.00E-144
Blast annotation: multifunctional protein 2

2.Location

Scaffold: PH01003026
Strand: -

RegionStartEnd
gene1864924572
mRNA1864924572
exon1864918749
exon1893419072
exon1915819306
exon1946819560
exon1981219933
exon2004420165
exon2030120555
exon2062920792
exon2139621482
exon2158421886
exon2199822053
exon2238422465
exon2255022617
exon2275422882
exon2310523176
exon2438624572
CDS1871418749
CDS1893419072
CDS1915819306
CDS1946819560
CDS1981219933
CDS2004420165
CDS2030120555
CDS2062920792
CDS2139621482
CDS2158421886
CDS2199822053
CDS2238422465
CDS2255022617
CDS2275422882
CDS2310523176
CDS2438624482

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00378.19ECH_114206
PF02737.173HCDH_N292393
PF00725.213HCDH396489

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:00038573-hydroxyacyl-CoA dehydrogenase activity
GO:0006631fatty acid metabolic process
GO:0008152metabolic process
GO:0016491oxidoreductase activity
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0050662coenzyme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.