PH01003027G0130's details annotation
1.Annotation
ICBR annotation: emp24/gp25L/p24 family protein, putative, expressed
Blast result AT5G01010 : 2.00E-157
Blast annotation: -
2.Location
Scaffold: PH01003027
Strand: +
| Region | Start | End |
| gene | 135341 | 141785 |
| mRNA | 135341 | 141785 |
| exon | 135341 | 135927 |
| exon | 136788 | 136866 |
| exon | 137938 | 138039 |
| exon | 138135 | 138163 |
| exon | 138349 | 138476 |
| exon | 138562 | 138694 |
| exon | 139451 | 139607 |
| exon | 139684 | 139762 |
| exon | 140009 | 140049 |
| exon | 140187 | 140303 |
| exon | 140473 | 140553 |
| exon | 140973 | 141785 |
| CDS | 135771 | 135927 |
| CDS | 136788 | 136866 |
| CDS | 137938 | 138039 |
| CDS | 138135 | 138163 |
| CDS | 138349 | 138476 |
| CDS | 138562 | 138694 |
| CDS | 139451 | 139607 |
| CDS | 139684 | 139762 |
| CDS | 140009 | 140049 |
| CDS | 140187 | 140303 |
| CDS | 140473 | 140553 |
| CDS | 140973 | 141522 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.