PH01003030G0110's details annotation
1.Annotation
ICBR annotation: CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT3G51850 : 1.90E-56
Blast annotation: calcium-dependent protein kinase 13
2.Location
Scaffold: PH01003030
Strand: -
| Region | Start | End |
| gene | 53763 | 61185 |
| mRNA | 53763 | 61185 |
| exon | 53763 | 54339 |
| exon | 54420 | 54650 |
| exon | 57042 | 57426 |
| exon | 57525 | 57838 |
| exon | 58791 | 58958 |
| exon | 59075 | 59190 |
| exon | 60500 | 61185 |
| CDS | 54190 | 54339 |
| CDS | 54420 | 54650 |
| CDS | 57042 | 57426 |
| CDS | 57525 | 57838 |
| CDS | 58791 | 58958 |
| CDS | 59075 | 59190 |
| CDS | 60500 | 60737 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00036.31 | EF-hand_1 | 131 | 158 |
| PF00078.26 | RVT_1 | 181 | 284 |
| PF13833.5 | EF-hand_8 | 395 | 427 |
| PF13499.5 | EF-hand_7 | 435 | 498 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003964 | RNA-directed DNA polymerase activity |
| GO:0005509 | calcium ion binding |
| GO:0006278 | RNA-dependent DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.