Annotation of co-expression genes

PH01003053G0050's details annotation

1.Annotation

ICBR annotation: potasium efflux antiporter protein, putative, expressed

Blast result AT4G04850 : 7.00E-168
Blast annotation: K+ efflux antiporter 3

2.Location

Scaffold: PH01003053
Strand: -

RegionStartEnd
gene5522666218
mRNA5522666218
exon5522656058
exon5616756328
exon5643156520
exon5665156812
exon5690057001
exon5708057151
exon5723457369
exon5745757678
exon5788857922
exon5802958163
exon5829958400
exon5889758947
exon5906459132
exon5944259519
exon5986760089
exon6110462146
exon6228462551
exon6309163296
exon6336963927
exon6402464682
exon6544265522
exon6561365714
exon6581866218
CDS5578356058
CDS5616756328
CDS5643156520
CDS5665156812
CDS5690057001
CDS5708057151
CDS5723457369
CDS5745757678
CDS5788857922
CDS5802958163
CDS5829958400
CDS5889758947
CDS5906459132
CDS5944259519
CDS5986760089
CDS6110462146
CDS6228462551
CDS6309163296
CDS6336963927
CDS6402464682
CDS6544265522
CDS6561365714
CDS6581866129

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000391translation release factor activity,
translation release factor activity, codon specific,
potassium ion transport,
translational termination,
malate_transport
solute:hydrogen antiporter activity,
transmembrane transport,
integral to membrane,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00999.20Na_H_Exchanger85166
PF14223.5Retrotran_gag_2194333
PF07727.13RVT_27711011
PF00999.20Na_H_Exchanger11361215
PF00999.20Na_H_Exchanger12221409
PF02254.17TrkA_N14411565

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006812cation transport
GO:0006813potassium ion transport
GO:0015299solute:hydrogen antiporter activity
GO:0016021integral to membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.