PH01003065G0070's details annotation
1.Annotation
ICBR annotation: lipase family protein, putative, expressed
Blast result AT1G73920 : 0.00E+00
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01003065
Strand: +
| Region | Start | End |
| gene | 23436 | 37736 |
| mRNA | 23436 | 37736 |
| exon | 23436 | 23725 |
| exon | 24308 | 24320 |
| exon | 24428 | 24475 |
| exon | 25240 | 25394 |
| exon | 26013 | 26203 |
| exon | 26289 | 26413 |
| exon | 26546 | 26638 |
| exon | 27136 | 27200 |
| exon | 27957 | 28341 |
| exon | 28582 | 28763 |
| exon | 30309 | 30482 |
| exon | 31913 | 32318 |
| exon | 32479 | 32744 |
| exon | 33372 | 33440 |
| exon | 33870 | 33878 |
| exon | 34728 | 34736 |
| exon | 35514 | 35566 |
| exon | 35656 | 35731 |
| exon | 35854 | 37736 |
| CDS | 23715 | 23725 |
| CDS | 24308 | 24320 |
| CDS | 24428 | 24475 |
| CDS | 25240 | 25394 |
| CDS | 26013 | 26203 |
| CDS | 26289 | 26413 |
| CDS | 26546 | 26638 |
| CDS | 27136 | 27200 |
| CDS | 27957 | 28341 |
| CDS | 28582 | 28763 |
| CDS | 30309 | 30482 |
| CDS | 31913 | 32318 |
| CDS | 32479 | 32744 |
| CDS | 33372 | 33440 |
| CDS | 33870 | 33878 |
| CDS | 34728 | 34736 |
| CDS | 35514 | 35566 |
| CDS | 35656 | 35731 |
| CDS | 35854 | 36844 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000497 | protein complex, extracellular region, calmodulin binding, protein polymerization, plant-type cell wall organization, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03690.12 | UPF0160 | 20 | 68 |
| PF12327.7 | FtsZ_C | 129 | 214 |
| PF04083.15 | Abhydro_lipase | 699 | 731 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
| GO:0006184 | GTP catabolic process |
| GO:0006629 | lipid metabolic process |
| GO:0043234 | protein complex |
| GO:0051258 | protein polymerization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.