PH01003073G0020's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01003073
Strand: +
| Region | Start | End |
| gene | 8773 | 15594 |
| mRNA | 8773 | 15594 |
| exon | 8773 | 10169 |
| exon | 10380 | 10840 |
| exon | 11764 | 11844 |
| exon | 12492 | 12610 |
| exon | 13058 | 13654 |
| exon | 14086 | 14368 |
| exon | 14435 | 14582 |
| exon | 15168 | 15255 |
| exon | 15458 | 15594 |
| CDS | 10046 | 10169 |
| CDS | 10380 | 10840 |
| CDS | 11764 | 11844 |
| CDS | 12492 | 12610 |
| CDS | 13058 | 13654 |
| CDS | 14086 | 14368 |
| CDS | 14435 | 14582 |
| CDS | 15168 | 15255 |
| CDS | 15458 | 15575 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13920.5 | zf-C3HC4_3 | 617 | 665 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
| GO:0016567 | protein ubiquitination |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.