PH01003085G0180's details annotation
1.Annotation
ICBR annotation: zinc carboxypeptidase family protein, putative, expressed
Blast result AT1G71696 : 2.10E-47
Blast annotation: carboxypeptidase D, putative
2.Location
Scaffold: PH01003085
Strand: -
| Region | Start | End |
| gene | 118156 | 123586 |
| mRNA | 118156 | 123586 |
| exon | 118156 | 118408 |
| exon | 119929 | 120033 |
| exon | 120144 | 120266 |
| exon | 120837 | 120932 |
| exon | 121418 | 121474 |
| exon | 121561 | 121614 |
| exon | 122231 | 122318 |
| exon | 122416 | 122479 |
| exon | 123257 | 123586 |
| CDS | 118244 | 118408 |
| CDS | 119929 | 120033 |
| CDS | 120144 | 120266 |
| CDS | 120837 | 120932 |
| CDS | 121418 | 121474 |
| CDS | 121561 | 121614 |
| CDS | 122231 | 122318 |
| CDS | 122416 | 122479 |
| CDS | 123257 | 123356 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00246.23 | Peptidase_M14 | 2 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004181 | metallocarboxypeptidase activity |
| GO:0006508 | proteolysis |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.