Annotation of co-expression genes

PH01003092G0070's details annotation

1.Annotation

ICBR annotation: receptor-like serine-threonine protein kinase, putative, expressed

Blast result AT4G23280 : 1.20E-59
Blast annotation: cysteine-rich RLK (RECEPTOR-like protein kinase) 20

2.Location

Scaffold: PH01003092
Strand: -

RegionStartEnd
gene2230226924
mRNA2230226924
exon2230223376
exon2357623726
exon2425724494
exon2469324954
exon2506425248
exon2534225452
exon2606926924
CDS2304723376
CDS2357623726
CDS2425724494
CDS2469324954
CDS2506425248
CDS2534225452
CDS2606926897

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01657.16Stress-antifung32128
PF01657.16Stress-antifung160255
PF07714.16Pkinase_Tyr370449

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004713protein tyrosine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.