PH01003093G0110's details annotation
1.Annotation
ICBR annotation: deoxyribodipyrimidine photolyase family protein, expressed
Blast result AT4G25290 : 1.60E-49
Blast annotation: DNA photolyases;DNA photolyases
2.Location
Scaffold: PH01003093
Strand: +
| Region | Start | End |
| gene | 56362 | 59317 |
| mRNA | 56362 | 59317 |
| exon | 56362 | 56949 |
| exon | 57792 | 57938 |
| exon | 57994 | 58181 |
| exon | 58270 | 58381 |
| exon | 58477 | 59317 |
| CDS | 56700 | 56949 |
| CDS | 57792 | 57938 |
| CDS | 57994 | 58181 |
| CDS | 58270 | 58381 |
| CDS | 58477 | 58844 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000468 | cofactor binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00875.17 | DNA_photolyase | 43 | 131 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.