Annotation of co-expression genes

PH01003110G0170's details annotation

1.Annotation

ICBR annotation: alpha-glucan phosphorylast isozyme, putative, expressed

Blast result AT3G29320 : 0.00E+00
Blast annotation: Glycosyl transferase, family 35

2.Location

Scaffold: PH01003110
Strand: -

RegionStartEnd
gene117270128334
mRNA117270128334
exon117270118054
exon118750118950
exon119051119237
exon119435119511
exon119781119858
exon119901120017
exon120089120217
exon120325120477
exon120587121051
exon121151121268
exon121409121680
exon122242122517
exon122657122833
exon123097123198
exon123293123486
exon125823126354
exon126554126860
exon127001127221
exon127432128334
CDS117938118054
CDS118750118950
CDS119051119237
CDS119435119511
CDS119781119858
CDS119901120017
CDS120089120217
CDS120325120477
CDS120587121051
CDS121151121268
CDS121409121680
CDS122242122517
CDS122657122833
CDS123097123198
CDS123293123486
CDS125823126354
CDS126554126860
CDS127001127221
CDS127432128286

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00078.26RVT_13162
PF00343.19Phosphorylase7241046
PF00343.19Phosphorylase11171519

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismstarch phosphorylase [EC:2.4.1.1]ko00500K00688

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003964RNA-directed DNA polymerase activity
GO:0005975carbohydrate metabolic process
GO:0006278RNA-dependent DNA replication
GO:0008184glycogen phosphorylase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.