PH01003119G0040's details annotation
1.Annotation
ICBR annotation: armadillo/beta-catenin-like repeat containing protein, expressed
Blast result AT5G37290 : 1.30E-56
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01003119
Strand: -
| Region | Start | End |
| gene | 19504 | 21902 |
| mRNA | 19504 | 21902 |
| exon | 19504 | 19878 |
| exon | 20010 | 20092 |
| exon | 20223 | 20412 |
| exon | 20528 | 20601 |
| exon | 21056 | 21092 |
| exon | 21196 | 21902 |
| CDS | 19708 | 19878 |
| CDS | 20010 | 20092 |
| CDS | 20223 | 20412 |
| CDS | 20528 | 20601 |
| CDS | 21056 | 21092 |
| CDS | 21196 | 21267 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00514.22 | Arm | 96 | 134 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.