PH01003145G0080's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L37a, putative, expressed
Blast result AT3G10950 : 5.00E-46
Blast annotation: Zinc-binding ribosomal protein family protein
2.Location
Scaffold: PH01003145
Strand: -
| Region | Start | End |
| gene | 44496 | 46851 |
| mRNA | 44496 | 46851 |
| exon | 44496 | 45541 |
| exon | 45634 | 45716 |
| exon | 45923 | 46011 |
| exon | 46093 | 46851 |
| CDS | 45478 | 45541 |
| CDS | 45634 | 45716 |
| CDS | 45923 | 46011 |
| CDS | 46093 | 46144 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01780.18 | Ribosomal_L37ae | 7 | 91 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L37Ae | ko03011 | K02921 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.