Annotation of co-expression genes

PH01003147G0160's details annotation

1.Annotation

ICBR annotation: monodehydroascorbate reductase, putative, expressed

Blast result AT3G27820 : 9.20E-86
Blast annotation: monodehydroascorbate reductase 4

2.Location

Scaffold: PH01003147
Strand: +

RegionStartEnd
gene135839147621
mRNA135839147621
exon135839137499
exon138116138167
exon139085139165
exon139448139566
exon139722139941
exon140065140183
exon140517140581
exon142571142949
exon143100143151
exon143650143730
exon145870145988
exon146416147621
CDS137494137499
CDS138116138167
CDS139085139165
CDS139448139566
CDS139722139941
CDS140065140183
CDS140517140581
CDS142571142949
CDS143100143151
CDS143650143730
CDS145870145988
CDS146416146490

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07992.13Pyr_redox_24197
PF07992.13Pyr_redox_2313434

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016491oxidoreductase activity
GO:0050660flavin adenine dinucleotide binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.