PH01003153G0130's details annotation
1.Annotation
ICBR annotation: ubiquitin fusion protein, putative, expressed
Blast result AT3G52590 : 5.40E-69
Blast annotation: ubiquitin extension protein 1
2.Location
Scaffold: PH01003153
Strand: +
| Region | Start | End |
| gene | 94986 | 97431 |
| mRNA | 94986 | 97431 |
| exon | 94986 | 95194 |
| exon | 95331 | 95520 |
| exon | 96915 | 96981 |
| exon | 97298 | 97431 |
| CDS | 95092 | 95194 |
| CDS | 95331 | 95520 |
| CDS | 96915 | 96981 |
| CDS | 97298 | 97327 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00240.22 | ubiquitin | 3 | 74 |
| PF01020.16 | Ribosomal_L40e | 78 | 127 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L40e | ko03011 | K02927 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005515 | protein binding |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.