PH01003169G0110's details annotation
1.Annotation
ICBR annotation: OsRhmbd14 - Putative Rhomboid homologue, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01003169
Strand: +
| Region | Start | End |
| gene | 79395 | 84716 |
| mRNA | 79395 | 84716 |
| exon | 79395 | 82288 |
| exon | 83132 | 83327 |
| exon | 83899 | 84716 |
| CDS | 82082 | 82288 |
| CDS | 83132 | 83327 |
| CDS | 83899 | 84668 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000784 | carbohydrate metabolic process, GH3 Glycoside_Hydrolases hydrolase activity, hydrolyzing O-glycosyl compounds, integral to membrane, polygalacturonase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01694.21 | Rhomboid | 93 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.