PH01003204G0040's details annotation
1.Annotation
ICBR annotation: ribosomal protein L14, putative, expressed
Blast result AT2G20450 : 1.80E-60
Blast annotation: Ribosomal protein L14
2.Location
Scaffold: PH01003204
Strand: +
| Region | Start | End |
| gene | 8414 | 10940 |
| mRNA | 8414 | 10940 |
| exon | 8414 | 8765 |
| exon | 8871 | 8972 |
| exon | 9955 | 10084 |
| exon | 10179 | 10291 |
| exon | 10377 | 10940 |
| CDS | 8763 | 8765 |
| CDS | 8871 | 8972 |
| CDS | 9955 | 10084 |
| CDS | 10179 | 10291 |
| CDS | 10377 | 10433 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000140 | Ribosome translation, Ribosome structural constituent of ribosome, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01929.16 | Ribosomal_L14e | 45 | 117 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L14e | ko03011 | K02875 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.