PH01003236G0060's details annotation
1.Annotation
ICBR annotation: OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed
Blast result AT2G30950 : 0.00E+00
Blast annotation: FtsH extracellular protease family
2.Location
Scaffold: PH01003236
Strand: +
| Region | Start | End |
| gene | 38190 | 43207 |
| mRNA | 38190 | 43207 |
| exon | 38190 | 40401 |
| exon | 40741 | 41054 |
| exon | 41118 | 41183 |
| exon | 42238 | 42556 |
| exon | 42599 | 43207 |
| CDS | 39268 | 40401 |
| CDS | 40741 | 41054 |
| CDS | 41118 | 41183 |
| CDS | 42238 | 42556 |
| CDS | 42599 | 43066 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00004.28 | AAA | 250 | 381 |
| PF01434.17 | Peptidase_M41 | 444 | 484 |
| PF01434.17 | Peptidase_M41 | 528 | 612 |
| PF01434.17 | Peptidase_M41 | 649 | 743 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0004222 | metalloendopeptidase activity |
| GO:0005524 | ATP binding |
| GO:0006508 | proteolysis |
| GO:0016020 | membrane |
| GO:0017111 | nucleoside-triphosphatase activity |
| GO:0030163 | protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.