Annotation of co-expression genes

PH01003264G0010's details annotation

1.Annotation

ICBR annotation: oryzain beta chain precursor, putative, expressed

Blast result AT5G43060 : 5.00E-112
Blast annotation: Granulin repeat cysteine protease family protein

2.Location

Scaffold: PH01003264
Strand: -

RegionStartEnd
gene4174186
mRNA4174186
exon4171033
exon11231263
exon13511583
exon18461910
exon28934186
CDS4791033
CDS11231263
CDS13511583
CDS18461910
CDS28932966

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000356glutaminyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
glutamine-tRNA ligase activity,
tRNA aminoacylation,
C2H2 Transcription_Regulator(from PlantTFDB)
ligase activity, forming aminoacyl-tRNA and related compounds,
NAD+ ADP-ribosyltransferase activity,
tRNA aminoacylation for protein translation,
coexpression networkCFinderM001119cysteine-type peptidase activity,
ubiquitin thiolesterase activity,
Protein_processing_in_endoplasmic_reticulum

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00112.22Peptidase_C143239
PF00396.17Granulin276322

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006508proteolysis
GO:0008234cysteine-type peptidase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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