PH01003273G0050's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G55610 : 2.00E-48
Blast annotation: -
2.Location
Scaffold: PH01003273
Strand: -
| Region | Start | End |
| gene | 29959 | 36432 |
| mRNA | 29959 | 36432 |
| exon | 29959 | 30940 |
| exon | 31450 | 31683 |
| exon | 31753 | 31839 |
| exon | 33226 | 33310 |
| exon | 33994 | 34333 |
| exon | 34833 | 34902 |
| exon | 35224 | 35344 |
| exon | 35698 | 36432 |
| CDS | 30867 | 30940 |
| CDS | 31450 | 31683 |
| CDS | 31753 | 31839 |
| CDS | 33226 | 33310 |
| CDS | 33994 | 34333 |
| CDS | 34833 | 34902 |
| CDS | 35224 | 35344 |
| CDS | 35698 | 35970 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001634 | Citrate_cycle_(TCA_cycle) Pyruvate_metabolism Glycolysis_/_Gluconeogenesis transferase activity, transferring acyl groups, pyruvate dehydrogenase complex, dihydrolipoyllysine-residue acetyltransferase activity, metabolic process, pyruvate metabolic process, small-subunit processome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.