PH01003295G0200's details annotation
1.Annotation
ICBR annotation: SAB, putative, expressed
Blast result AT1G58250 : 0
Blast annotation: Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
2.Location
Scaffold: PH01003295
Strand: +
| Region | Start | End |
| gene | 107388 | 122980 |
| mRNA | 107388 | 122980 |
| exon | 107388 | 107985 |
| exon | 109465 | 109576 |
| exon | 110313 | 110573 |
| exon | 111140 | 111405 |
| exon | 111699 | 111921 |
| exon | 112968 | 113141 |
| exon | 113230 | 113307 |
| exon | 113385 | 113636 |
| exon | 114229 | 116313 |
| exon | 117740 | 117800 |
| exon | 118469 | 118745 |
| exon | 120020 | 120101 |
| exon | 120152 | 121850 |
| exon | 122008 | 122108 |
| exon | 122527 | 122980 |
| CDS | 107849 | 107985 |
| CDS | 109465 | 109576 |
| CDS | 110313 | 110573 |
| CDS | 111140 | 111405 |
| CDS | 111699 | 111921 |
| CDS | 112968 | 113141 |
| CDS | 113230 | 113307 |
| CDS | 113385 | 113636 |
| CDS | 114229 | 116313 |
| CDS | 117740 | 117800 |
| CDS | 118469 | 118745 |
| CDS | 120020 | 120101 |
| CDS | 120152 | 121850 |
| CDS | 122008 | 122108 |
| CDS | 122527 | 122571 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001676 | Spliceosome |
| coexpression network | CFinderM001691 | Spliceosome Rab GTPase activator activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.