PH01003339G0020's details annotation
1.Annotation
ICBR annotation: OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT2G22990 : 7.00E-49
Blast annotation: sinapoylglucose 1
2.Location
Scaffold: PH01003339
Strand: +
| Region | Start | End |
| gene | 8000 | 11054 |
| mRNA | 8000 | 11054 |
| exon | 8000 | 8582 |
| exon | 8649 | 8794 |
| exon | 9481 | 9557 |
| exon | 9721 | 11054 |
| CDS | 8407 | 8582 |
| CDS | 8649 | 8794 |
| CDS | 9481 | 9557 |
| CDS | 9721 | 10818 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000392 | malate_transport Peroxisome Glyoxylate_and_dicarboxylate_metabolism glycopeptide_alpha-N-acetylgalactosaminidase_activity serine-type carboxypeptidase activity, FMN binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 2 | 249 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.