PH01003351G0230's details annotation
1.Annotation
ICBR annotation: KH domain-containing protein, putative, expressed
Blast result AT5G15270 : 4.00E-149
Blast annotation: RNA-binding KH domain-containing protein
2.Location
Scaffold: PH01003351
Strand: -
| Region | Start | End |
| gene | 140060 | 144382 |
| mRNA | 140060 | 144382 |
| exon | 140060 | 140348 |
| exon | 140445 | 140711 |
| exon | 140798 | 141055 |
| exon | 141150 | 141572 |
| exon | 142014 | 142589 |
| exon | 144212 | 144382 |
| CDS | 140286 | 140348 |
| CDS | 140445 | 140711 |
| CDS | 140798 | 141055 |
| CDS | 141150 | 141572 |
| CDS | 142014 | 142589 |
| CDS | 144212 | 144316 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00013.28 | KH_1 | 78 | 131 |
| PF00013.28 | KH_1 | 175 | 242 |
| PF00013.28 | KH_1 | 319 | 366 |
| PF00013.28 | KH_1 | 402 | 469 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.