PH01003376G0010's details annotation
1.Annotation
ICBR annotation: oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Blast result AT2G48080 : 8.60E-69
Blast annotation: oxidoreductase, 2OG-Fe(II) oxygenase family protein
2.Location
Scaffold: PH01003376
Strand: -
| Region | Start | End |
| gene | 8199 | 19832 |
| mRNA | 8199 | 19832 |
| exon | 8199 | 9293 |
| exon | 9423 | 9522 |
| exon | 9874 | 10043 |
| exon | 12719 | 12791 |
| exon | 12894 | 13048 |
| exon | 13576 | 13691 |
| exon | 13853 | 13954 |
| exon | 15071 | 15188 |
| exon | 16193 | 16220 |
| exon | 19341 | 19832 |
| CDS | 9033 | 9293 |
| CDS | 9423 | 9522 |
| CDS | 9874 | 10043 |
| CDS | 12719 | 12791 |
| CDS | 12894 | 13048 |
| CDS | 13576 | 13691 |
| CDS | 13853 | 13954 |
| CDS | 15071 | 15188 |
| CDS | 16193 | 16220 |
| CDS | 19341 | 19588 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.