Annotation of co-expression genes

PH01003405G0160's details annotation

1.Annotation

ICBR annotation: glutamate dehydrogenase protein, putative, expressed

Blast result AT1G51720 : 1.00E-121
Blast annotation: Amino acid dehydrogenase family protein

2.Location

Scaffold: PH01003405
Strand: -

RegionStartEnd
gene120140129168
mRNA120140129168
exon120140121034
exon121128121208
exon121495121586
exon121668121825
exon121904121994
exon122609122694
exon122776122831
exon122973123067
exon123426123462
exon123509123595
exon124351124531
exon124647124714
exon125820125879
exon125955126041
exon126642126843
exon126926127052
exon127816129168
CDS120915121034
CDS121128121208
CDS121495121586
CDS121668121825
CDS121904121994
CDS122609122694
CDS122776122831
CDS122973123067
CDS123426123462
CDS123509123595
CDS124351124531
CDS124647124714
CDS125820125879
CDS125955126041
CDS126642126843
CDS126926127052
CDS127816128401

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02812.17ELFV_dehydrog_N249353
PF00208.20ELFV_dehydrog498716

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006520cellular amino acid metabolic process
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.