PH01003409G0070's details annotation
1.Annotation
ICBR annotation: transcription factor S-II, central domain containing protein, expressed
Blast result AT5G11430 : 3.60E-56
Blast annotation: SPOC domain / Transcription elongation factor S-II protein
2.Location
Scaffold: PH01003409
Strand: -
| Region | Start | End |
| gene | 43046 | 45749 |
| mRNA | 43046 | 45749 |
| exon | 43046 | 45120 |
| exon | 45228 | 45749 |
| CDS | 44096 | 45120 |
| CDS | 45228 | 45357 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07500.13 | TFIIS_M | 132 | 218 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006351 | transcription, DNA-dependent |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.